PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc033350.1_g00001.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 184aa    MW: 21071.5 Da    PI: 6.6283
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc033350.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.82.6e-1164139390
                     FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                              Y ++++ +GF++rk+k+ +              +++ k+ +++++ ++++ ++++ trt C+a+++v+++++g++ev+   + HnH
  Itr_sc033350.1_g00001.1  64 YAQHSRALGFRTRKAKNLQG-------------TRKSKNLDNQSEvSSSKGKRKNITRTRCEASMRVRLNDEGVYEVAYHITSHNH 136
                              55555666666666665544.............22233333322233455567899****************************** PP

                     FAR1  88 ela 90 
                              +l+
  Itr_sc033350.1_g00001.1 137 PLT 139
                              *97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.9E-978139IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MEPENLCSDG NDETDEAFVD EQHLTCPTVL YNEENVMNGE NEVDICGSLE GLKRKTLDEM  60
YELYAQHSRA LGFRTRKAKN LQGTRKSKNL DNQSEVSSSK GKRKNITRTR CEASMRVRLN  120
DEGVYEVAYH ITSHNHPLTR KEWVHLHRSE REITSEKAQA IKTMISSGMR AVDSFRYMVQ  180
EAGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010665579.19e-33PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0J8C8122e-30A0A0J8C812_BETVU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1746022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-10FAR1-related sequence 5